Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNNPHKGYVGHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLGSKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
3K8U Chain:A ((5-141))
------HYKLVPQI----DTRDCGPAVLASVAKHYGSNYSIAYLRELSKTNK--------------------QGTTALGIVEAAKKLGFETRSIKA-DMTLF-DYNDLTYPFIVHVIKG------------------KRLQHYYVVYGSQNNQLIIGDPD---PSVK------------VTRMSKERFQSEWT--G-LAIFLAPQ-------------
General information:
TITO was launched using:
RESULT:
Template:
3K8U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113664 for 1100 contacts (-103.3/contact) +
2D Compatibility (PS) -15457 + (NN) -8607 + (LL) 4064
1D Compatibility (HY) -400 + (ID) 950
Total energy: -135014.0 ( -122.74 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_3K8U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K8U-query.scw
PDB file :
Tito_Scwrl_3K8U.pdb
: