Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIFGELGSLGHLFKKTQELEILHGYLQDVMQKGSEANQRVLNLAINTEFQVPLEHGIFSIEQSYCLEHAKEGEKGFFESHRQYVDFQLIIKGVEGAKVAD-INRAVIKTPYDEKRDLIVYEPVSEASFLHLDAGMLAIFLENDAHALRFYGESFEKYREEPIFKAVVKMPKGLIKLKL
1S4C Chain:A ((1-155))
-MIISSLTNPNFKVGLPKVIAEVCDYLNTL---------DLNALENG---RHDINDQIYMNVMEPETAE---PSSKKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCV---------EKIKKLVVKVPVKLI----
General information:
TITO was launched using:
RESULT:
Template:
1S4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78855 for 1089 contacts (-72.4/contact) +
2D Compatibility (PS) -15497 + (NN) 2533 + (LL) 2268
1D Compatibility (HY) -9200 + (ID) 1550
Total energy: -100301.0 ( -92.10 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_1S4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S4C-query.scw
PDB file :
Tito_Scwrl_1S4C.pdb
: