Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKALMFTLLGVSLAFATPYTIDKANSSVW--YEVKHFTFNETRGAFDNFDGKIDLEPNTKVLSVFEGNIDLKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKY-EDG---KIHGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSNAVVGDEVKIEIKLEAYAQ
1Y0G Chain:D ((23-190))
-----------------ADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKYPQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKR-AGFEAEGKIKLKDFNIKTDLGPA--SQEVDLIISVEGVQQ
General information:
TITO was launched using:
RESULT:
Template:
1Y0G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26673 for 1122 contacts (-23.8/contact) +
2D Compatibility (PS) -16809 + (NN) 5087 + (LL) 2504
1D Compatibility (HY) -10400 + (ID) 3050
Total energy: -49341.0 ( -43.98 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0G-query.scw
PDB file :
Tito_Scwrl_1Y0G.pdb
: