Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIDTHCHLDHKDYENDLDEVLKESLEKGVTQCVIPGADMKDLNRAVGISEKFEG-VFFAIGAHPYD----VESFDEGL--FEKFVSHQKCVAIGECGLDYYRLPELSERENYKSKQKEIFTKQIEFSIQHNKPLIIHIREASFDSLNLLKSYPKAFGVLHCFNAD-SMLLELSDRFYYGIGGVSTFKNAKRLVEILPKIPKNRLLLETDSPYLTPHPFRGTRNSPTYIPLIAQKIAEIIHIETEELASLSTHNAQTLFNFP
2Y1H Chain:A ((6-263))
-LVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVHPVQRSVTLKDLDVALPIIENY--KDRLLAIGEVGLDFS--PRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQ-KLVKQLPLTSICLETDSPALGPE--KQVRNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLFPKL
General information:
TITO was launched using:
RESULT:
Template:
2Y1H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143692 for 2142 contacts (-67.1/contact) +
2D Compatibility (PS) -25638 + (NN) -14546 + (LL) 832
1D Compatibility (HY) -16400 + (ID) 3700
Total energy: -203144.0 ( -94.84 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2Y1H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y1H-query.scw
PDB file :
Tito_Scwrl_2Y1H.pdb
: