Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWKLALCQTDVVFKYPDANYARIEKAIVEAAKNGADIAVLPEMWNTGYALNELAG---VADLNGGRTKEFLATLSEKHQIAIIGGSVSISEGTKFSN-TMYAFDKYGGLLSSYKKVHLFQLMNEHLYLEAGNDKNLFRLDGVSCAGFICYDIRFPEWIRKHTSEGSEVIFVSAQWPAERVTQWEQLLIARAIENQTFVVAVNRVGDDPNNHFNGHSLVIDPLGNIVVHGGEEEGNIYAEIDLNLVAETRGIIPV--FTDRRPELY
4IZU Chain:A ((22-279))
--RIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPQLFGFGYVPSQICAQVSAEQVDAARSR--LRGIARDRGIALVW-SLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLV--VDLP----------ADYLQDRRAELH
General information:
TITO was launched using:
RESULT:
Template:
4IZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146758 for 2127 contacts (-69.0/contact) +
2D Compatibility (PS) -26351 + (NN) -11131 + (LL) 1540
1D Compatibility (HY) -11600 + (ID) 3200
Total energy: -197500.0 ( -92.85 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_4IZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IZU-query.scw
PDB file :
Tito_Scwrl_4IZU.pdb
: