Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYQSLSNIIINLQANKDLLLQQDNEVDRIKSILPLVVARNSIIETLGRNPVWGISLTDDVNNLKIDNQLVTEVIPFDWNNETLYLCYFSDLESSNSPSEMGISFQLVNIFSLS
2DIR Chain:A ((63-96))
-----------------------------------------------------------NSENKVDLTNPQYTVVVEIIKAVCCLSVVKSGPS--------------------
General information:
TITO was launched using:
RESULT:
Template:
2DIR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5514 for 119 contacts (-46.3/contact) +
2D Compatibility (PS) -3618 + (NN) 306 + (LL) 5332
1D Compatibility (HY) -800 + (ID) 200
Total energy: -4494.0 ( -37.76 by residue)
QMean score : 0.128
(partial model without unconserved sides chains):
PDB file :
Tito_2DIR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DIR-query.scw
PDB file :
Tito_Scwrl_2DIR.pdb
: