Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEF-----FEKNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQE-NEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNF-GALLQEPNYDRKIFQD
3N4K Chain:A ((7-164))
----IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQAND---YLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALLK-----------
General information:
TITO was launched using:
RESULT:
Template:
3N4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88743 for 1068 contacts (-83.1/contact) +
2D Compatibility (PS) -16257 + (NN) -5617 + (LL) 556
1D Compatibility (HY) -12400 + (ID) 3300
Total energy: -125761.0 ( -117.75 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_3N4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N4K-query.scw
PDB file :
Tito_Scwrl_3N4K.pdb
: