Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LSYEPNTKETMQKIKELTSIPSPTGNTGKIIEKLAKDLDASKIPYRLNNKGGLIVTLPGKDETKHRMLTAHVDTLGAMVKEIKADGRLLLTLIGGYRFNAIEGEYCTIETSAGDLYSGTILMHQTSVHVYKDAGTAERNDKNM------EVRLDVKALDADKVRALGIEVGDFVSFDPRVQIINDEYIKSRHLDDKASVAILLQLINHIHENNLELPHTTHF-LISNNEEIGYGGNS----NIPAETVEYLAVDMGALGDGQTSDEYTV-------SICAKDGSGPYHLGLRKHLVELAKKNNIDYKVDIYPFYASDASAAINAGNDIIHGLIGPGIDASHAYERTHRDSLYHTEKLVYAYLFSNILK |
4P6Y Chain:A ((5-284)) | -------------IRKLTEAFGPSGREEEVRSIILEELEGHIDGHRIDGLGNLIV-WKGSGE-KKVILDAHIDEIGVVVTNVDDKGFLTIEPVGGVSPYMLLGKRIRFE-------NGTIGV------VGMEGETTEERQENVRKLSFDKLFIDIGANSREEAQKM-CPIGSFGVYDSGFVEVSGKYV-SKAMDDRIGCAVIVEVFKRIK------PAVTLYGVFSVQEEVGLVGASVAGYGVPAD--EAIAIDVTDSADTPKAIKRHAMRLSGGPALKVKDRASISSKRILENLIEIAEKFDIKYQMEVLTFGGTNA-------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P6Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109129 for 1998 contacts (-54.6/contact) +
2D Compatibility (PS) -28639 + (NN) -15429 + (LL) 5108
1D Compatibility (HY) -18400 + (ID) 3400
Total energy: -169889.0 ( -85.03 by residue)
QMean score : 0.357
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