Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEVHFVGAGPGDKELITLKGYQLLKEADVVIYAGSLVNPELLEYCKASCEI----HNSASMNLIEIIDCMEAGVTAGKEVVRLQTGDFSIYGSIREQVEEMKKRSIPFTCTPGVSSFLGAASSFGVEYTVPEVSQSVIITRMAGRTPVPSRESLR--SYAAHQTSMVIFLSVQGIRKVVSELIKGGYKPETPAAVIYKATWAEEKKVTGTLEDIAEKVTEAGITKTALIMVGDFLGEEFYYSKLYDKDFKHEYR
2YBO Chain:A ((27-255))
---VALVGAGPGDPGLLTLRAWALLQQAEVVVY-DRLVARELIALLPESCQRIYVG----PQE--EINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSC--TFVTGHLQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVG----------------------
General information:
TITO was launched using:
RESULT:
Template:
2YBO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147609 for 1756 contacts (-84.1/contact) +
2D Compatibility (PS) -23249 + (NN) -7141 + (LL) 2804
1D Compatibility (HY) -18000 + (ID) 3150
Total energy: -196345.0 ( -111.81 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_2YBO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YBO-query.scw
PDB file :
Tito_Scwrl_2YBO.pdb
: