Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDITATRYTGTDLVGPLGEEA--IKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAKKYNLNTVSDMRKVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFPMQIGLIYTALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFFPPYDASALATDEILKKHPELKTTINKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQKNNYFEGKN |
1SW5 Chain:A ((6-271)) | ---------------------------------ERVVIGSKPFNEQYILANMIAILLEEN-GYKAEVKEGLGGTLVNYEALKRNDIQLY-VEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWAEENGVEKISDLAEFADQLVFGSDPEFASRP-DGLPQIKKVYGFEFKEVKQMEPTLMYEAIKNKQVDVIPAYTTDSRVDLFNLKILEDDKGALPPYDAIIIVNGNTAKDE-KLISVLKLLEDRIDTDTMRALNYQYDVEKKDAREIAMSFLKEQ------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SW5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95291 for 2190 contacts (-43.5/contact) +
2D Compatibility (PS) -28462 + (NN) -5784 + (LL) 1980
1D Compatibility (HY) -18800 + (ID) 4300
Total energy: -150657.0 ( -68.79 by residue)
QMean score : 0.483
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