Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHL----YRDTQKLS--AFGQKKQTLTISHNYLEN--TYERLYLPKTVKVVKSDTLAF-------DANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN
4CP6 Chain:A ((138-244))
-------------------------------------FSELEEIELPASLEYIGTSAFSFSQKLKKLTFSSSSKLELISHEAFANLSNLEKLTLPKSVKTLGSNLFRLTTSLKHVDVEEGNESFASVDGVLFSKDKTQLIYYPSQKNDESYK
General information:
TITO was launched using:
RESULT:
Template:
4CP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25891 for 559 contacts (-46.3/contact) +
2D Compatibility (PS) -8947 + (NN) 5324 + (LL) 4332
1D Compatibility (HY) -5600 + (ID) 1500
Total energy: -32282.0 ( -57.75 by residue)
QMean score : 0.099
(partial model without unconserved sides chains):
PDB file :
Tito_4CP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CP6-query.scw
PDB file :
Tito_Scwrl_4CP6.pdb
: