Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASIIYSPKDIFEQ-DFKVSMRGYDKKEVDVF--LDDVIKDYENYLEQIEKLQMENRRLQQALDKKESEASNVRNSGTAMYNQKPIAQSATNFDILKRISRLEKEVFGRQIRE
2H4R Chain:A ((233-290))
-------PVLIMEKMNFKMIELPYVKRELSMFILLPDDIKDGTTGLEQLER-ELTYERLSEWADSKMMTETLVDLHLPKFSLEDRIDLRDTLRNMGMTTAFTTNADFRGMTDK
General information:
TITO was launched using:
RESULT:
Template:
2H4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9834 for 269 contacts (36.6/contact) +
2D Compatibility (PS) -6021 + (NN) -3817 + (LL) 972
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -3732.0 ( -13.87 by residue)
QMean score : 0.169
(partial model without unconserved sides chains):
PDB file :
Tito_2H4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4R-query.scw
PDB file :
Tito_Scwrl_2H4R.pdb
: