Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRIFKALLKMEFLLTKRQLANLIMAIGMPV-AFFLFFSGFMGEGLTKAIEAIYVRNYMITMAGFSSLSFAFFTF----PFSMKDDQLSNRMQLLRHSPVPMWQYYLAKIIRILFYYCLAITV---VFLTGHILRQVSM---PIEQWMQS------------FLLLLGGATCFIPFGLLVSYFKNTELMSMVAN----ICYMSLAVLGGM--WMPITMFPKWLQALSKLTPTYHLTQVILSPFANSFAGFSLIILIGYGIIMLVIAYLLSQKRHSI |
| 2NYG Chain:A ((2-271)) | --LKKIVESTTFPRTKQSITEDLKALGLKKGMTVLVHSSLSSIGWVNGGAVAVIQALIDVVTEEGTIVMPSQSVELSDPKEWGNPPVPEEWWDIIRESMPAYNSNYTPTTRGMGQIVELFRSYPEVKRSNHPNYSFVAWGKHKNKILNQHPLEFGLGEQSPLGKLYIRESYVLLLGADFDSSTCFHLAEYRIPYQKIINRGAPIIVEGKRVWKEYKELEFREELFQEVGQAFEAEHNMKV---GKVGSANCRLFSLTEAVDFAEKWFINNDSKNI |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2NYG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -282214 for 1874 contacts (-150.6/contact) +
2D Compatibility (PS) -25210 + (NN) -3410 + (LL) 444
1D Compatibility (HY) -800 + (ID) 1050
Total energy: -312240.0 ( -166.62 by residue)
QMean score : 0.212
|
|
|