Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQKNNRLGYFGRQKQAFDDYVFLTKAKMKAERDYFASEGESDPERLAAQKARDQEFLKSLKKVGIGF--------IAFLLFYAIVRTVLGLW
2WWB Chain:B ((25-67))
------------------------------------------------CTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG-
General information:
TITO was launched using:
RESULT:
Template:
2WWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3580 for 129 contacts (-27.8/contact) +
2D Compatibility (PS) -3418 + (NN) -653 + (LL) 3180
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -6571.0 ( -50.94 by residue)
QMean score : 0.703
(partial model without unconserved sides chains):
PDB file :
Tito_2WWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WWB-query.scw
PDB file :
Tito_Scwrl_2WWB.pdb
: