Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKLLRKEVLITLKSQPQAYKSEVDCKL---LEAFIKTKAYQNSCVI-------ATYLSFDYEYNTQLLIKQALCDGKRVLVPKTYPKGKMIFVDYQKDNLRATPFGLLEPVNDRAVEKASIDLIHVPGLIFNNKGFRIGYGAGYFDRYLSDF--EGDTISTIYRCQRQDFVEEKHDVAVKEVLCL
1SBQ Chain:A ((26-186))
MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIKNEVTFVDFFFEF---LKINQI-----RAVYPKVISDTEIIFIDQETNTF----------------EPNQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLTRQQPKIGIAYSFQKGDFLADPWDVQLDLIIND
General information:
TITO was launched using:
RESULT:
Template:
1SBQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68352 for 1021 contacts (-66.9/contact) +
2D Compatibility (PS) -15879 + (NN) -2963 + (LL) 1044
1D Compatibility (HY) -15600 + (ID) 2400
Total energy: -104150.0 ( -102.01 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_1SBQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SBQ-query.scw
PDB file :
Tito_Scwrl_1SBQ.pdb
: