Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTYRVKSDKDFQMIFSRGKNVANRKFVIYY---LEKEQKHFRVGISVSKKLGNAVVRNAIKRKIRHVLLSQKTALQDYD---FVVIA---RKGVEELNYQALEKNLIHVLKIAGLI
2VV5 Chain:A ((25-106))
-----------------------------LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQ-------TASVIAVLGAAGLV
General information:
TITO was launched using:
RESULT:
Template:
2VV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8891 for 364 contacts (-24.4/contact) +
2D Compatibility (PS) -7662 + (NN) -4719 + (LL) 2876
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -26896.0 ( -73.89 by residue)
QMean score : 0.248
(partial model without unconserved sides chains):
PDB file :
Tito_2VV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VV5-query.scw
PDB file :
Tito_Scwrl_2VV5.pdb
: