Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISSNYSYPLDPSWNTEDITKVLRFLNQVEHAYENSVKVDDLLDSYKEFKKVVKSK----AQEKQIDREFQRTSGYSTYQAVKAAQQQAKGFISLGR
1NT4 Chain:A ((123-206))
---------MDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQ---QCSLVDGKNTFSAKYQQEPGVSGPLKVGN
General information:
TITO was launched using:
RESULT:
Template:
1NT4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 17379 for 447 contacts (38.9/contact) +
2D Compatibility (PS) -8077 + (NN) -1036 + (LL) 520
1D Compatibility (HY) -1600 + (ID) 1100
Total energy: 6086.0 ( 13.62 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_1NT4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NT4-query.scw
PDB file :
Tito_Scwrl_1NT4.pdb
: