Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIGIVGTNSNKSTNRQLLQYMQQHFADKAEIELIEVKD--LPLFNKPADKNVPQVILDIAAKIEEADGVIIGTPEYDHSIPSALMSVLAWLSYGIYPLLNKPVMITGASYGTLGSSRAQLQLRQILNAPELKASVLPDEFLLSHSLQAFDKDGNLHDIETSQKLDAIFDDFRLFVKITGKLSNARDLLQKEAENFDWESL
3GFR Chain:A ((3-136))
--MLVINGTPRKHGRTRIAASYIAALY----HTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKY--KPVALLAVAGGGKGGINALNNMRTVMRG--VYANVIPKQLVLLPVHIDVENATVAENIKESIKELVEELSMFAKA-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77966 for 1040 contacts (-75.0/contact) +
2D Compatibility (PS) -14895 + (NN) -9443 + (LL) 1936
1D Compatibility (HY) -8800 + (ID) 1650
Total energy: -110818.0 ( -106.56 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3GFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFR-query.scw
PDB file :
Tito_Scwrl_3GFR.pdb
: