Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLATICYIDNGKELLLLHRNKKENDVHEGKWISVGGKLEAGETPDECAKREILEETHLTVKKMDFKGVITF-----PEFTPGHDWYTYVFKVTDYEGELISDDESREGTLEWVPYDQVLSKPTWQGDYEIFKWILEDVPFFSAKFVYDEHQNLIEKTVNFYEK
4C9W Chain:A ((6-135))
-SRLYTLVLVLQPQRVLL---GMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVH-----VFCTDSIQGTPVESDEMRPC---WFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV
General information:
TITO was launched using:
RESULT:
Template:
4C9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44564 for 901 contacts (-49.5/contact) +
2D Compatibility (PS) -13434 + (NN) -4861 + (LL) 1176
1D Compatibility (HY) -9600 + (ID) 2100
Total energy: -73383.0 ( -81.45 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_4C9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C9W-query.scw
PDB file :
Tito_Scwrl_4C9W.pdb
: