Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKKFAFAKGIATGVVATAATLAGAAFAIKKTIIEPEEEKIAFIEENRKKAARKRVSH
3ZGX Chain:C ((53-76))
------------LDIASEYLVMAATLLSIKSRMLLP----------------------
General information:
TITO was launched using:
RESULT:
Template:
3ZGX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1298 for 85 contacts (-15.3/contact) +
2D Compatibility (PS) -2573 + (NN) -2687 + (LL) 3496
1D Compatibility (HY) -2000 + (ID) 200
Total energy: -5262.0 ( -61.91 by residue)
QMean score : -0.029
(partial model without unconserved sides chains):
PDB file :
Tito_3ZGX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZGX-query.scw
PDB file :
Tito_Scwrl_3ZGX.pdb
: