Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKKIILKSSVLGLVAGTSIMFSSAFADQ----VGVQVIGVNDFHGALDNTGTANMPDGKVTNAGTAAQLDAYIDDAQKDFKQTNPNGESIRVQAGDMVGASPANSGLLQD-EPTVKTFNAMNVEYGTLGNHEFDEGLAEYNRIVTGKAPAPDSNINNITKSYPHEAAKQEIVVANVIDKVNKQIPYNWKPYAIKNIPVNNKSVNVGFIGIVTKDIPNLVLRKNYEQYEF---LDEAETIVKYAKELQAKNVKAIVVLAHVPATSKDDIAEGEAAEMMKKVNQLFPENSVDIVFAGHNHQ-------------YTNGLVGK------TRIVQALSQGK--AYADVR---GVLDTDTQDFIETPSAKVVAVAPGKKTGSADIQAIVDQANTIV---------KQVTEAKIGTAEVSGMITRSVDQDNVSPV----GSLITEAQLAIARKSWPDIDFAMTNNGGIRADLLIKPDGTITWGAAQAVQPFGNILQVVEITGRDLYKALN--EQYDQKQNFFLQIAGLRYTYTDNKEGGEETPFKVVKAYKSNGEEINPDAKYKLVINDFLFGGGDGFASFRNAKLLGAINP---DTEVFMAYITDLEKAGKKVSVPNNKPKIYVTMKMVNETITQNDGTHSIIKKLYLDRQGNIVAQEIVSDTLNQTKSKSTKINPVTTIHKKQLHQFTAINPMRNYGKPSNSTTVKSKQLPKTNSEYGQSFLMSVFGVGLIGIALNTKKKHMK |
| 2USH Chain:A ((26-530)) | ---------------------------YEQDKTYKITVLHTNDHHGHFWRN--------EYGEYGLAAQ-KTLVDGIRKEVAAEG--GSVLLLSGGDINTGVPESD--LQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQ--------------------QEKWAKFPLLSANIYQKSTGERLF--KPWAL----FKRQDLKIAVIGLTTDDTAK-----YFTDIEFRKPADEAKLVIQ---ELQ-QTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKV------SERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIG--ETNGRLEG--DRDKVRFVQTNMGRLILAAQMDRT-----GADFAVMSGGGIRDSI---EAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAK-----------------KIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKP--GYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSW-------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2USH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126735 for 3649 contacts (-34.7/contact) +
2D Compatibility (PS) -47584 + (NN) -20742 + (LL) 13092
1D Compatibility (HY) -22800 + (ID) 6500
Total energy: -211269.0 ( -57.90 by residue)
QMean score : 0.430
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