Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------MLSRQNSKLIQAFIAIILFFSLGLVIKY-WPDTVIAFDQNIQESVRGQLPNLSTRFFKLITVIGNTVSQIAIAIMSV----TFCYLKKWYPQARFIAVNAIISGICILSLKLIFQRVRPTLTHLVFAGGYSFPSGHSMGTFMIFGSIIILLQYYMPKSIWKLLCQGILGLLIFL-IGLSRIYLGVHFPTDVLAGFILAYGILNLTAYIFLAKDWLKKVK
1L1N Chain:A ((1-180))
GPGFDYAVAMAKRNIVTATTS------KGEFTMLGVHDNVAILPTHASPG------ESIVID--GKEVEIL----DAKALEDQAGTNLEITIITLKRNEKFRDIRPHIPT--QIT--ETNDGVLIVNTSK-YPNMYVPVGAVTEQGYLNLG----------GRQTARTLMYNFPTR------AGQCGGVITCT----GKVIGMHVGGNGSHGFAAA-----------LKRSYFT---
General information:
TITO was launched using:
RESULT:
Template:
1L1N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -233566 for 1209 contacts (-193.2/contact) +
2D Compatibility (PS) -16416 + (NN) -635 + (LL) 5068
1D Compatibility (HY) -1600 + (ID) 1250
Total energy: -248399.0 ( -205.46 by residue)
QMean score : 0.148
(partial model without unconserved sides chains):
PDB file :
Tito_1L1N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L1N-query.scw
PDB file :
Tito_Scwrl_1L1N.pdb
: