Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKILFFGEPLIRITP------KENDYFADSISTKLFYGGSEVNTARALQGFGQDTKLLSALPNNPIGNSFLQFLKAQGIDTHSIQWVGER-VGLYFLEDSFACR-KGEVVYDRDHSSLHDFRINQIDFDQLF-EGVSLFHFSGITLSLDESIQEITLLLLKEAKKREITISLDLNFRSKLISP--KNAKILFSQFATFADICFGIEPLMVDSQDTTFF----NRDEATIEDVKERMISLINHFDFQVIFHTKRLQDEWGRNHYQAYIANRKQEFVTSKEITTAVNQRIGSGDAFVAGALYQLLQHSDSKTVIDFAVASASLKCALEGDN-MFETVTAVNKVLNQSKDIIR |
2VAR Chain:A ((2-312)) | -VDVIALGEPLIQFNSFNPGPLRFVNYFEKHVA------GSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYRKGSA--GSRLSPEDINENYVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSR----SLDTNIRPKLWSSLEKAKETILSILKK-----YDIEVLITDPDDTKILLDVTDPDEA-YRKYKE--------------LGVKVLLYKLGSKGAIAYKDNVKA-FKDAYKV--PVEDPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLNEFK---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VAR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68926 for 2739 contacts (-25.2/contact) +
2D Compatibility (PS) -31204 + (NN) -4817 + (LL) 4020
1D Compatibility (HY) -19200 + (ID) 4500
Total energy: -124627.0 ( -45.50 by residue)
QMean score : 0.420
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