Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKTHIAWASACLLLVMLTGFFTIGQQTYKIEKLKDKNEVLSEKIKELNHIESTSSASENKAFFEAFFNYSDID--IR--YETVKKHTTGKGFDYAFPSRSD---QKHTVSVQ---SELLSLESYSKPLDESHELFLNIVEVATTA--NSV-----TTNQVLIVQTTMKKEKDGWLVDNVQVKGNG
5D9R Chain:A ((676-799))-------------------------------------------------------ARTAENIVSKWQKIKSLAFGPDHRIEMLPEVLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDSVTVSA---DGTRALVEATLEESACLSDLVHPENNATDVRTYTTRYEVFWSKSGWKITEGSVL---


General information:
TITO was launched using:
RESULT:

Template: 5D9R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 433 -34799 -80.37 -325.22
target 2D structure prediction score : 0.36
Monomeric hydrophicity matching model chain A : 0.60

3D Compatibility (PKB) : -80.37
2D Compatibility (Sec. Struct. Predict.) : 0.36
1D Compatibility (Hydrophobicity) : 0.60
QMean score : 0.357

(partial model without unconserved sides chains):
PDB file : Tito_5D9R.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5D9R-query.scw
PDB file : Tito_Scwrl_5D9R.pdb: