Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSEQSASIEHVDVLIVGAGISGTGAAYYLKTMQPAKTFAIVEA-----------RYPAIRSDSDLHTFSYEF-----KPWQHEKATASADAIMVHRGRSLAGGDRTLRHRRTRHHELRMVIIGSGATAVTLVPAMAQTAGAVTMPK
2YM1 Chain:A ((15-98))
---------EEVDVLVVGAGFSGLYALYRLREL--GRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEIL-----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2YM1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23051 for 342 contacts (-67.4/contact) +
2D Compatibility (PS) -6577 + (NN) 3504 + (LL) 4556
1D Compatibility (HY) -6400 + (ID) 1300
Total energy: -29268.0 ( -85.58 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_2YM1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YM1-query.scw
PDB file :
Tito_Scwrl_2YM1.pdb
: