Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFS-NKAYLRQ-LQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAHAPGENC---RVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDRERLECFE
4BYY Chain:A ((5-222))
-------QEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPR---TSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRA
General information:
TITO was launched using:
RESULT:
Template:
4BYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109116 for 1544 contacts (-70.7/contact) +
2D Compatibility (PS) -22769 + (NN) -12516 + (LL) 1328
1D Compatibility (HY) -14400 + (ID) 2950
Total energy: -160423.0 ( -103.90 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_4BYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BYY-query.scw
PDB file :
Tito_Scwrl_4BYY.pdb
: