Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MHNESRPEAPLRVLVVGAGFAGLGLAIRLRQAGIDDYLVLEKAADVGGCWRENRYPGAACDVPSHLYSFSFEPKA----DWSRKFAPQAEILDYLRHCADKYRLREKIRFHCEVEEARFDAGSGEWQVRCADGQTLRARALVCATGQLSRPLLPRLPGLERFQGPAFHSANWDAE-VELAGKRVAVIGTGASAIQFVPRIAPQVQRLSLFQRSA------------PYVIAKPDRTYADWERRLKARWPWLQRLDRGLKYLHHESRMLAFATF--------PALMKVMR------------LSFHRH-LHRQIADPQLRARLVPD-YPLGCKRILISNDYYPALARSNVELVDT---GIREVTEDAVVGRDGRRHEVDAIIFGTGF-AATEFLAPMRILGLDGRDLRQAWADGAEAYKGISVSGFPNLFILYGPNTNLGHNSIVYMLESQFPYVLGCLRQLQEQGLRYLDVKPEVQRRFNLEVQQGLRHTVWERGCDSWYKTAAGKNTNNWPGYTFVYRWRTRRPELADYDLAR |
2YM2 Chain:A ((12-505)) | -----QPPEEVDVLVVGAGFSGLYALYRLRELGRSVH-VIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPN-PGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEF-REESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKKLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSE-REYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVNEIADETLYPMTA-SWYTGANVPGKPRVFMLYVGGFHRYRQICDEVAAKGY |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YM2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -281512 for 3635 contacts (-77.4/contact) +
2D Compatibility (PS) -47299 + (NN) -12276 + (LL) 456
1D Compatibility (HY) -32000 + (ID) 8600
Total energy: -381231.0 ( -104.88 by residue)
QMean score : 0.462
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