Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKRLWVGVVSIFPEMFRAISDYGITSRAVKQGLLTLTCWNPRDYTEDRHQTVDDRPFGGGPGMVMKIKPLEGALADARQAAGGRKAKVIYLSPQGRQLTQAGVRELAEEEALILIAGRYEGIDERFIEEHVDEEWSIGDYVLSGGELPAMVLVDAVTRLLPGALGHADSAEEDSFTDGLLDCPHYTRPEVYADKRVPEVLLSGNHEHIRRWRLQQALGRTWERRADLLDSRSLSGEEQKLLAEYIRQRDDS
1UAJ Chain:A ((1-239))
----MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAI-HTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLG-------------LLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKE--------
General information:
TITO was launched using:
RESULT:
Template:
1UAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134740 for 1640 contacts (-82.2/contact) +
2D Compatibility (PS) -24347 + (NN) -8021 + (LL) 1144
1D Compatibility (HY) -30000 + (ID) 7250
Total energy: -203214.0 ( -123.91 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1UAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UAJ-query.scw
PDB file :
Tito_Scwrl_1UAJ.pdb
: