Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVNANISESLTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAET--DGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP
1JNW Chain:A ((28-218))
-------------------------PADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
General information:
TITO was launched using:
RESULT:
Template:
1JNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66710 for 1322 contacts (-50.5/contact) +
2D Compatibility (PS) -20783 + (NN) -10882 + (LL) 1220
1D Compatibility (HY) -12800 + (ID) 3100
Total energy: -113055.0 ( -85.52 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1JNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JNW-query.scw
PDB file :
Tito_Scwrl_1JNW.pdb
: