Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSTEKTKLG---VHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQ--NPEALKWILDRKITADSVGLGLTSELR----SWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAA--ERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEV--VKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKK---LRVVETGGNSFAAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTCPIVRDPIDY |
| 4E4J Chain:A ((35-429)) | ---------GINVYSEIGELKEVLVHTPGDEIRYTAPSRLEELLFSAVLKADTAIEEHKGFVKILQNNGIKVIQLCDLVAETYELCSKEVRNSFIEQYL--DEALPVLKKEIRPVVKDYLLSFPTVQMVRKMMSGILANELNIKQ-------------DNPLIIDGMPNLYFTRDPFASMGNGVSINCMKYPTRKREVIFSRFVFTNNPKYKNTP---RYFDIVGNNG--TIEGGDIFIYNSKTLVIGNSERTNFAAIESVAKNIQANKDCTFERIVVINVPPMPNLMHLDTWLTMLDYDKFLYSPNMMNVLKIWEIDLNVKPVK------FVEKKGTLEEVLYSIIDKKPILIPIAGKGANQLDIDIETHFDGTNYLTIAPGVVVGYERNEKTQKALVEAGIKVLSFNGSQLSLGMGSARCMSMPLIRE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4E4J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180637 for 3207 contacts (-56.3/contact) +
2D Compatibility (PS) -41300 + (NN) -21170 + (LL) 2228
1D Compatibility (HY) -28800 + (ID) 6000
Total energy: -275679.0 ( -85.96 by residue)
QMean score : 0.453
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