Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKVGEGFEEETVDGRKCRSLPTWENENKIHCTQTLLEGDGPKTYWTRELAND-ELILTFGADDVVCTRIYVRE
1CBQ Chain:A ((1-137))
-PNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVYVRE
General information:
TITO was launched using:
RESULT:
Template:
1CBQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37385 for 966 contacts (-38.7/contact) +
2D Compatibility (PS) -15093 + (NN) -5620 + (LL) 208
1D Compatibility (HY) -16400 + (ID) 5250
Total energy: -79540.0 ( -82.34 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1CBQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CBQ-query.scw
PDB file :
Tito_Scwrl_1CBQ.pdb
: