Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL
4DSO Chain:A ((4-167))
--EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKH----------------
General information:
TITO was launched using:
RESULT:
Template:
4DSO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96060 for 1348 contacts (-71.3/contact) +
2D Compatibility (PS) -17556 + (NN) -1762 + (LL) 1296
1D Compatibility (HY) -19200 + (ID) 4750
Total energy: -138032.0 ( -102.40 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_4DSO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DSO-query.scw
PDB file :
Tito_Scwrl_4DSO.pdb
: