Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
2VFA Chain:A ((17-223))
--------VFVKDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIR-------------KVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKK---
General information:
TITO was launched using:
RESULT:
Template:
2VFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167666 for 1496 contacts (-112.1/contact) +
2D Compatibility (PS) -21270 + (NN) -6009 + (LL) 960
1D Compatibility (HY) -29600 + (ID) 7650
Total energy: -231235.0 ( -154.57 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_2VFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VFA-query.scw
PDB file :
Tito_Scwrl_2VFA.pdb
: