Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG
1Z5N Chain:A ((11-242))
MKIGIIGAMEEQVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG
General information:
TITO was launched using:
RESULT:
Template:
1Z5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180249 for 2074 contacts (-86.9/contact) +
2D Compatibility (PS) -25491 + (NN) -18126 + (LL) 0
1D Compatibility (HY) -33200 + (ID) 11550
Total energy: -268616.0 ( -129.52 by residue)
QMean score : 0.824
(partial model without unconserved sides chains):
PDB file :
Tito_1Z5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z5N-query.scw
PDB file :
Tito_Scwrl_1Z5N.pdb
: