Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
1KPE Chain:B ((13-125))
-------------GGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
General information:
TITO was launched using:
RESULT:
Template:
1KPE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84358 for 813 contacts (-103.8/contact) +
2D Compatibility (PS) -12457 + (NN) -10645 + (LL) 1352
1D Compatibility (HY) -16000 + (ID) 5650
Total energy: -127758.0 ( -157.14 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_1KPE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KPE-query.scw
PDB file :
Tito_Scwrl_1KPE.pdb
: