Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
4DVI Chain:A ((9-211))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVN-KLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAY---MFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSV-GLAYAEYVIYRGEQAYPEYLITYQIMKPE---
General information:
TITO was launched using:
RESULT:
Template:
4DVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65596 for 1541 contacts (-42.6/contact) +
2D Compatibility (PS) -21540 + (NN) -8607 + (LL) -180
1D Compatibility (HY) -26400 + (ID) 9900
Total energy: -132223.0 ( -85.80 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_4DVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DVI-query.scw
PDB file :
Tito_Scwrl_4DVI.pdb
: