Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGKVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSVREPQ
3VGN Chain:A ((1-127))
MNLPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGLGGGKVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSV----
General information:
TITO was launched using:
RESULT:
Template:
3VGN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82346 for 943 contacts (-87.3/contact) +
2D Compatibility (PS) -14227 + (NN) -6021 + (LL) 184
1D Compatibility (HY) -18800 + (ID) 6300
Total energy: -127510.0 ( -135.22 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_3VGN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VGN-query.scw
PDB file :
Tito_Scwrl_3VGN.pdb
: