Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDVLSPGQGNNTTSPPAPFETGGNTTGISDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVLNKWTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLIS-IPPMLGWRTPEDR------SDPDACTISKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAA-RFRIRKTVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFCRQ |
3P0G Chain:A ((46-476)) | ----------------------------------------IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAK------------------------------------------------------------------------------------------------------------------L-KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRR--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3P0G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -259738 for 1942 contacts (-133.7/contact) +
2D Compatibility (PS) -26144 + (NN) -4895 + (LL) 6148
1D Compatibility (HY) -37200 + (ID) 5100
Total energy: -326929.0 ( -168.35 by residue)
QMean score : 0.438
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