Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAQRQPHSPNQTLISITNDTESSSSVVSNDNTNKGWSGDNSPGIEALCAIYITYAVIISVGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEGWLFGRIGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSNAILKTCVKAGCVWIVSMIFA-LPEAIFSNVYTFRDPNKNMTFE--SCTSYPVSKKLLQEIHSLLCFLVFYIIPLSIISVYYSLIARTLYKSTLNIPTEEQSHARKQIESRKRIA-----RTVLVLVALFALCWLPNHLLYLYHSFTSQTYVDPSAMHFIFTIFSRVLAFSNSCVNPFALYWLSKSFQKHFKAQL-FCCKAERPEPPVADTSLTTLAVMGTVPGTGSIQMSEISVTSFTGCSVKQAEDRF |
| 2VT4 Chain:A ((19-298)) | ------------------------------------------------------ALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP--IMMHWWRDEDPQALKCYQDPGCCDFVTNRA--------------YAIASSIISFYIPLLIMIFVALRVYREAKEQIR------------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPD-----WLFVAFNW-LGYANSAMNPI-IYCRSPDFRKAFKRLLA------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180522 for 1912 contacts (-94.4/contact) +
2D Compatibility (PS) -25584 + (NN) 582 + (LL) 8824
1D Compatibility (HY) -28800 + (ID) 3950
Total energy: -229450.0 ( -120.01 by residue)
QMean score : 0.296
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