Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGNRSTADADGLLAGRGPAAGASAGASAGLAGQGAAALVGGVLLIGAVLAGNSLVCVSVATERALQTPTNSFIVSLAAADLLLALLVLPLFVYSEVQGGAWLLSPRLCDALMAMDVMLCTASIFNLCAISVDRFVAVAVPLRYNRQGGSRRQLLLIGATWLLSAAVAA-PVLCGLNDVRGRDPAVCRLED--------RDYVVYSSVCSFFLPCPLMLLLYWATF----RGLQRWEVAR-----RAKLHGRAPRRPS-GPGPPSPTPPAPRLPQDPCGPDCAPPAPGL-----PRGPCGPDCAPAAPGLPPDPCGPDCAPPAPGLPQDPCGPDCAPPAPGLPRGPCGPDCAPPAPGLPQDPCGPDCAPPAPGLPPDPCGSNCAPPDAVRAAALPPQTPPQTRRRRRAKITG---------RERKAMRVLPVVVGAFLLCWTPFFVVHITQALCPACSVPPRLVSAVTWLGYVNSALNPVIYTVFNAEFRNVFRKALRACC |
2RH1 Chain:A ((49-461)) | ------------------------------------------LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP-FGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRN------AKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQK------------RWDEAAVNLAK------SRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNL-IRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELLCL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RH1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146158 for 2752 contacts (-53.1/contact) +
2D Compatibility (PS) -38143 + (NN) 3850 + (LL) 1260
1D Compatibility (HY) -32400 + (ID) 5400
Total energy: -216991.0 ( -78.85 by residue)
QMean score : 0.162
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