Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLAAAFADSNSSSMNVSFAHLHFAGGYLPSDSQDWRTIIPALLVAVCLVGFVGNLCVIGILLHNAWKGKPSMIHSLILNLSLADLSLLLFSAPIRATAYSKSVWDLGWFVCKSSDWFIHTCMAAKSLTIVVVAKVCFMYASDPAKQVSIHNYTIWSVLVA-IWTVASLLPLPEWFFSTIRHHEGVEMCLVDVPAVAEEFMSM-FGKLYPLLAFGLPLFFASFYFWRAYDQCKK---RGTKTQNLRNQIRSKQVTVMLLSIAI-ISALLWLPEWVAWLWVWHLKAAGPAPPQGFIALSQVLMFSISSANPLIFLVMSEEFREGLKGVWKWMITKKPPTVSESQETPAGNSEGLPDKVPSPESPASIPEKEKPSSPSSGKGKTEKAEIPILPDVEQFWHERDTVPSVQDNDPIPWEHEDQETGEGVK |
4BVN Chain:A ((7-296)) | -------------------------------SQQWEAGMSLLMALVVLLIVAGNVLVIAAI--GSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASVETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR---KRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFL--VNIVNVFNRDLVPKWLFVAFNW-LGYANSAMNPII-LCRSPDFRKAFKRLLA------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BVN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217906 for 2093 contacts (-104.1/contact) +
2D Compatibility (PS) -28911 + (NN) -11505 + (LL) 5208
1D Compatibility (HY) -24000 + (ID) 3150
Total energy: -280264.0 ( -133.91 by residue)
QMean score : 0.260
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