Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVIMGQCYYNETIGFFYNNSGKELSSHWRPKDVVVVALGLTVSVLVLLTNLLVIAAIASNRRFHQPIYYLLGNLAAADLFAGVAYLFLMFHTGPRTARLSLEGWFLRQGLLDTSLTAS-VATLLAIAVERHRSVMAVQLHSRLPRG-RVVMLIVGVWVAALGLGLLP--------------AHSWHCLCALDRC--SRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMAEHVSCHPRYRETTLSLV---KTVVIILGAFVVCWTPGQVVLLLDGLGCESCNVLAVEKYFL--LLAEANSLVNAAVYSCRDAEMRRTFRRLLCCACLRQSTRESVHYTSSAQGGASTRIMLPENGHPLMDSTL |
| 4UG2 Chain:A ((8-309)) | ---------------------------------VYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGV--LAIPFAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFA-CVLVPLLLMLGVYLRIFLAARRQL------------ARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFF-CPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR----------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4UG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -216725 for 2029 contacts (-106.8/contact) +
2D Compatibility (PS) -27230 + (NN) -11863 + (LL) 4460
1D Compatibility (HY) -26400 + (ID) 4350
Total energy: -282108.0 ( -139.04 by residue)
QMean score : 0.246
|
|
|