Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSTLPTQIAPNSSTSMAPTFLLVGMPGLSGAPSWWTLPLIAVYLLSALGNGTILWIIALQPALHRPMHFFLFLLSVSDIGLVTALMPTLLGIALAGAHTVPASACLLQMVFIHVFSVMESSVLLAMSIDRALAICRPLHYPALLTNGVISKISLAISFRCLGLHLPLPFLLAYMPYCLPQVLTHSYCLHPDVAR-LACPEAWGAA---------YSLFVVLSAMGLDPLLIFFSYGL-----IGKVLQGVESR---EDRWKAGQTCAAHLSAVL-----LFYIPMILLALINHPEL--PITQHTHTLLSYVHFLLP---PLINPILYSVKMKE--------IRKRILNRLQPRKVGGAQ |
| 3VGA Chain:A ((14-308)) | ---------------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP--FAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVT-GTRAKGIIAICW-------VLSFAIGLTP-----MLGWNNCGQ-----SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200880 for 1736 contacts (-115.7/contact) +
2D Compatibility (PS) -25602 + (NN) -7481 + (LL) 3408
1D Compatibility (HY) -24800 + (ID) 3650
Total energy: -259005.0 ( -149.20 by residue)
QMean score : 0.281
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