Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEPLFPAPFWEVIYGSHLQGNLSLLSPNHSLLPPHLLLNASHGAFLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQ-DYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLS--------------------------------------------GSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQ------GLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENF---------KACFRKFCCASALRRDVQVSDRVRSIAKDVALACKTSETVPRPA |
| 4MBS Chain:A ((38-366)) | --------------------------------------------------------LYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLTVPFWA-HYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFASLPNIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEEFRNYLLVFFQ-------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MBS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227485 for 1990 contacts (-114.3/contact) +
2D Compatibility (PS) -27054 + (NN) -247 + (LL) 6248
1D Compatibility (HY) -34000 + (ID) 3950
Total energy: -286488.0 ( -143.96 by residue)
QMean score : 0.388
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