Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEPRNQTSASQFILLGLSEKPEQETLLFSLFFCMYLVMVVGNLLIILAISIDSHLHTPMYFFLANLSLVDFCLATNTIPKMLVSLQTGSKAISYPCCLIQMYFFHFFGIVDSVIIAMMAY--DRFVAICHPLHYAKIMSLRLCRLLVGALWAFSCFISLTHILLM----------ARLVFCGSHEVPHYFCDLTPILRLSCTDTSVNRIFILIVAGMVIATPFVCILASYARILVAIMK-------VPSAGGR--KKAFSTCSSHLSVVALF-------YGTTIGVYLCPSSVLTTVKEKASAVMYTAVTPMLNPFIYSLRNRDLKGALRKLVNRKITSSS |
| 2YDO Chain:A ((21-307)) | --------------------------------------ILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP-FAIAISTGFCAACHGCLFIACFVLV---LTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYM---------VYFNFFACVLV--PLLLMLGVYLRIFLAARRQLKQMES-------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -270413 for 1868 contacts (-144.8/contact) +
2D Compatibility (PS) -25413 + (NN) -7346 + (LL) 3988
1D Compatibility (HY) -27200 + (ID) 3100
Total energy: -329484.0 ( -176.38 by residue)
QMean score : 0.307
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