Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNWVNDSIIQEFILLGFSDRPWLEFPLLVVFLISYTVTIFG-NLTIILVSRLDTKLHTPMYFFLTNLSLLDLCYTTCTVPQMLVNLCSIRKVISYRGCVAQLFIFLALGATEYLLLAVMSFDRFVAICRPLHYSVIMHQRLCLQLAAASWVTGFSNSVWLSTLTLQLPLCDPYVIDHFLCEVPALLKLSCVETTANEAELFLVSELFHLIPLTLILISYAFIV----RAVLRIQSAEGRQKAFGTCGSHLIVVSLFY------STAVSVYLQPPSPSSKDQGKM---VSLFYGIIAPMLNPLIYTLRNKEVKEGFKRLVARVFLIKK |
| 1LN6 Chain:A ((40-313)) | ---------------------------LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMA------LACAAPPLVGWSRYIPEGMQCSC-GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF--THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVVATTLCCGKNP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195709 for 2020 contacts (-96.9/contact) +
2D Compatibility (PS) -23862 + (NN) 20928 + (LL) 2048
1D Compatibility (HY) -21200 + (ID) 2950
Total energy: -220745.0 ( -109.28 by residue)
QMean score : 0.105
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