Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLQKLMEPEAGTNRTAVAEFILLGLVQTEEMQPVVFVLLLFAYLVTTGGNLSILAAVLVEPKLHAPMYFFLGNLSVLDVGCITVTVPAMLGRLLSHKSTISYDACLSQLFFFHLLAGMDCFLLTA-------MAYDRLLAICQPLTYSTRMSQTVQRMLVAASLACAFTNALTHTVAMSTLNFCGPNEVNHFYCDLPQLFQL----SCSSTQLNELLLFAVGFIMAGTPLVLII----TAYSHVAAAVLRIRSVEGRK--KAFSTCGSHLTVVCL----FFGRGIFNYMRLGSEEASDKDKGVGVFNTV--INPMLNPLIYSLRNPDVQGALWQIFLGRRSLT |
| 2VT4 Chain:A ((10-292)) | -------------------------------WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP--FGATLVVRGTWLWGSFLCELW-----TSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT------------VWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR---------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVF----NRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145944 for 1671 contacts (-87.3/contact) +
2D Compatibility (PS) -24297 + (NN) -6734 + (LL) 6840
1D Compatibility (HY) -23600 + (ID) 3250
Total energy: -196985.0 ( -117.88 by residue)
QMean score : 0.154
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