Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSAPSTLPPGGEEGLGTAWPSAANASSAPAEAEEAVAGPGDARAAGMVAIQCIYALVCLVGLVGNALVIFVILRYAKMKTATNIYLLNLAVADELFMLSVPFVASSAALRHWPFGSVLCRAVLSVDGLNMFTSVFCLTVLSVDRYVAVVHPLRAATYRRPSVAKLINLGVWLASLLVTLPIAIFADTRPARGGQAVACNLQWPHPA---WSAVFVVYTFLLGFLLPVLAIGLCY---LLIVGKMRAVA---------------------------LRAGW--------------QQRRRSEKKITRLVLMVVVVFVLCWMPFYVVQLLNLF-----------VTSLDATVNHVSLILSYANSCANPILYGFLSDNFRR----FFQRVLCLRCCLLEGAGGAEEEPLDYYATALKSKGGAGCMCPPLPCQQEALQPEPGRKRIPLTRTTTF |
4MBS Chain:A ((38-366)) | ----------------------------------------------------LYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQ-WDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFASLPNIIF--TRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAM-QVTETLGMTHCCINPIIYAFVGEEFRNYLLVFFQ----------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MBS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -240692 for 1942 contacts (-123.9/contact) +
2D Compatibility (PS) -26916 + (NN) -8781 + (LL) 5472
1D Compatibility (HY) -38400 + (ID) 4600
Total energy: -313917.0 ( -161.65 by residue)
QMean score : 0.333
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