Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTHTLYPTPFALYPINISAAWHLGPLPVSCFVSNKYQCSLAFGATTGLRVLVVVVPQTQLSFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYKPRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGSTCLLSV--FQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNITKKGDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICR----------------------------------------------------------------------------------------------------------------------------------------------------NNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNS---SWWLVNTAALIIACFPTISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM |
| 3V2Y Chain:A ((69-495)) | -------------------------------------------------------------------------------------------VFILICCFIILENIFVLLTIWKT---KKFHRPMYYFIGNLALSDLLAGVAY-TANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML-K------------NNFRLFLLISACWVISLILGGLPIMGWNCIS---------ALSSCSTVLPLY--HKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPL--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V2Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141884 for 1948 contacts (-72.8/contact) +
2D Compatibility (PS) -27084 + (NN) -3572 + (LL) 8636
1D Compatibility (HY) -14800 + (ID) 1650
Total energy: -180354.0 ( -92.58 by residue)
QMean score : 0.241
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