Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------LTPCEEATNLLTPCLRYLWAPPEAKPSPECCSGLDK-----VNKGVKTYDDRHDMCICLSSEAAIT----------------SADQYKFDNLPKLCNVAL----FAPVGP----KFDCSTIKV---------
1JOP Chain:A ((1-155))
MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEPKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCVIKKLVVKVPVKLI
General information:
TITO was launched using:
RESULT:
Template:
1JOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27166 for 503 contacts (-54.0/contact) +
2D Compatibility (PS) -10329 + (NN) -4525 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -45870.0 ( -91.19 by residue)
QMean score : 0.244
(partial model without unconserved sides chains):
PDB file :
Tito_1JOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOP-query.scw
PDB file :
Tito_Scwrl_1JOP.pdb
: